biosecure incubator

How to Set Up a Clean, Biosecure Incubator

January 10, 20255 min read

How to Set Up a Clean, Biosecure Incubator

Your incubator is the heart of the hatching process, and it needs to be clean, properly set up, and biosecure to ensure healthy, thriving chicks. Without proper preparation, the incubator can become a breeding ground for harmful bacteria, mold, or viruses, putting your eggs and flock at risk.

In this blog post, we’ll guide you through the steps to clean, disinfect, and prepare your incubator. We’ll also include tips for handling both traditional upright incubators and those that roll eggs on their sides. Let’s set the stage for a successful hatch!


Why a Clean Incubator Matters

Even a small amount of dirt, dust, or residue from a previous hatch can harbor harmful pathogens. These contaminants can infect eggs, compromise chick health, or lead to failed hatches. Preparing your incubator properly eliminates these risks and ensures that your eggs develop in a safe and clean environment.


Step 1: Clean and Disinfect Your Incubator

Before each hatch, it’s essential to thoroughly clean and disinfect your incubator. This step prevents the buildup of bacteria, mold, and other pathogens that could harm your eggs.

How to Clean Your Incubator:

  1. Disassemble All Removable Parts:

    • Remove trays, racks, water reservoirs, and other detachable components.

    • If your incubator includes a fan, gently clean it following the manufacturer’s instructions.

  2. Wash with Warm, Soapy Water:

    • Use a mild dish soap and warm water to clean all removable parts. Scrub gently with a soft cloth or sponge to avoid damaging surfaces.

  3. Disinfect the Surfaces:

    • Use a non-toxic poultry-safe disinfectant or a diluted bleach solution (1 part bleach to 10 parts water).

    • Wipe down the interior walls, trays, and all surfaces inside the incubator.

  4. Dry Thoroughly:

    • Allow all parts to air dry completely before reassembling. Moisture left behind can lead to mold growth.

Pro Tip: Avoid harsh chemicals that leave residue, as they can harm developing embryos. Stick to poultry-safe cleaning products.


Step 2: Inspect and Clean the Fan (if Applicable)

If your incubator has a fan, keeping it clean is essential for proper airflow and temperature regulation. Dust and debris can accumulate on the fan, reducing its effectiveness and spreading contaminants.

How to Clean the Fan:

  • Unplug the Incubator: Always unplug your incubator before cleaning the fan.

  • Remove Dust: Use compressed air or a soft brush to carefully remove dust and debris from the fan blades.

  • Wipe with Disinfectant: If the fan blades are accessible, wipe them gently with a disinfectant cloth.

Pro Tip: Follow the manufacturer’s instructions for cleaning the fan to avoid damaging it.


Step 3: Test Your Incubator Before Use

Once your incubator is clean and reassembled, it’s important to test it to ensure stable temperature and humidity levels before adding your eggs. Running a test cycle will help you identify and fix any issues ahead of time.

How to Test Your Incubator:

  1. Set Up a Thermometer and Hygrometer:

    • Use a reliable thermometer and hygrometer to monitor the incubator’s temperature and humidity. Even if your incubator has a built-in display, it’s a good idea to use a backup for accuracy.

  2. Run the Incubator for 24 Hours:

    • Allow the incubator to run for a full day to confirm that temperature and humidity remain consistent.

    • Ideal settings for most eggs:

      • Temperature: 99.5°F for forced-air incubators, 101°F for still-air models.

      • Humidity: 40–50% for the first 18 days of incubation.

  3. Use Distilled or Sanitized Water:

    • Fill the water reservoirs with distilled or sanitized water to maintain proper humidity levels. Avoid using tap water, which can leave mineral deposits or introduce bacteria.

  4. Check for Air Circulation:

    • Ensure the fan (if present) is functioning properly and circulating air evenly.


Step 4: Place Eggs into the Incubator

Once your incubator is clean and ready, it’s time to load your eggs. Proper placement is essential for even development and a healthy hatch.

How to Place Eggs in the Incubator:

  1. Position Eggs According to Your Incubator Design:

    • Upright Incubators: Place eggs with the pointy end down in the trays. This position keeps the air cell at the larger end of the egg, ensuring proper development.

    • Side-Rolling Incubators: Lay eggs on their sides in the incubator. These incubators are designed to gently roll the eggs to mimic a hen’s natural turning process.

  2. Don’t Overcrowd:

    • Leave space between eggs to allow for proper air circulation. Overcrowding can lead to uneven temperature and humidity distribution.

  3. Handle Eggs Gently:

    • Be careful not to crack or damage the shells when placing eggs into the incubator. Cracked eggs are more likely to harbor bacteria and compromise the hatch.


Step 5: Turn the Eggs (If Not Automated)

Eggs need to be turned regularly to prevent the yolk from sticking to the shell and to encourage even embryo development. Many modern incubators have automatic turning mechanisms, but if yours doesn’t, you’ll need to do this manually.

Manual Egg Turning Tips:

  • Turn the eggs at least 3 times a day.

  • Stop turning the eggs 3 days before hatch day (day 18 for chicken eggs). This allows the chicks to position themselves for hatching.

  • Always wash your hands or wear gloves when handling eggs to avoid introducing bacteria.

Pro Tip: Mark one side of the eggs with a pencil (e.g., an "X") to ensure you’re turning them evenly.


Why a Biosecure Incubator is Essential

A clean, biosecure incubator provides a safe environment for eggs and helps prevent diseases from spreading to your chicks or flock. By eliminating dust, bacteria, and other contaminants, you’re increasing hatch rates and setting the stage for healthy, thriving chicks.


Your Path to a Successful Hatch

Setting up a clean, biosecure incubator is one of the most important steps in the hatching process. By following these steps, you’ll create the perfect environment for your eggs and minimize the risk of contamination.

Here’s a quick recap:

  • Clean and disinfect your incubator thoroughly before every hatch.

  • Test temperature and humidity levels for 24 hours before adding eggs.

  • Position eggs properly (pointy-end down or on their sides, depending on the incubator).

  • Turn eggs regularly, unless your incubator has an automatic turning feature.

By investing time in these steps, you’re setting yourself up for a successful hatch and healthy chicks. Stay tuned for our next post, where we’ll cover monitoring eggs during incubation and troubleshooting common issues.

Have questions about incubator setup or hatching eggs? Let us know!


Key Takeaway: A clean, well-prepared incubator is the foundation of a successful hatch. Whether your incubator holds eggs upright or rolls them on their sides, biosecurity and attention to detail are your best tools for protecting your eggs and ensuring a healthy hatch. 🐣

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